Sunday, September 28, 2014

Getting Ston(ey)ed with Coral

We're Back! The new Depth and Taxa headquarters (AKA my apartment) is all set up with a fancy desk and everything. Thanks everyone for your patience during my moving process. So without further ado let's get back in the swing of things.

There was some great news that came out of the US National Oceanographic and Atmospheric Administration (NOAA) last month. Twenty coral species have been listed under the Endangered Species Act. "What? That's horrible, more corals are at risk of extinction!" you might be saying, but listing as endangered actually benefits many animals that are at the brink. When organisms are imperiled by extinction listing them serves to provide legal protections for, not only them, but also their ecosystems. It's kind of like a silent alarm going off. When someone breaks in, property is at risk, but once the alarm goes off; the police can come and take steps to keep you from being burgled. It's about time we got serious about protecting coral too. Whole reefs are in danger of disappearing. One study suggests that coral cover in the region between Asia, Australia and Hawaii has decreased by 20% since just the early eighties.

So why do we care? Coral is certainly very pretty, but it's also a fascinating and essential organism.

Seen here being all three at once.
Courtesy Ian Robertson via Flickr

Coral is a massive and incredibly old group of animals. In fact just about anything you think of as ancient, corals were there for its beginning: Megalodon? Coral bemoans its short time on the planet. Dinosaurs? Yeah coral thought they were cool for a while. Coelocanths? They're just trying to steal coral's old-timey charm. What I'm getting at is that coral shows up very early in the fossil record, something like 480 million years ago!

So what's the secret to coral's success? Well diversity is a big part of it. There are something like 2,500 coral species on earth today. They can be hard, soft, individual, colonial, small, large, tropical, temperate, shallow, and deep.  The corals we're most familiar with, and all of those recently added to the endangered species list, are the shallow-living stony corals we like to brag about snorkeling among when we take a trip to the tropics.

All corals are a part of the cnidarian phylum which you may remember from the earlier post about jellyfish.You might also remember that the scyphozoa, hydrozoa, and cubozoa have two life stages: the free-living medusa and the stuck-on polyp. Corals are part of the anthozoa which are all the animals that have no medusa stage.

Perseus can get behind an animal that removes the medusa. (I will not apologize for this terrible joke)
Courtesy Wally Gobetz via Flickr

What stands stony corals out from other members of their phylum is their structure. Unlike sea anemones or jellies; stony corals actually secrete a skeleton. Coral that you might find at a jeweler's, or on the beach, is in fact the skeletal remains of a stony coral. So your beach house may have skeletons in its closet as well as on its coffee table. These skeletons, made of the same molecules as eggshells, are what allow for the gigantic reefs seen in tropical waters throughout the world. And amazingly every reef starts out as a single teeny-tiny coral polyp.

See when a coral mommy-daddy and daddy-mommy (many stony corals are hermaphroditic) love each other very much, and the season and tidal phase are right, they pour floating packets of sperm and eggs out of their bodies and into the water. It's all very romantic as thousands of other animals circle the waters around them devouring their genetic material before it even has a chance to mix. But luckily there are so many of these gamete (reproductive cells) balloons that some do make a new baby coral. At this point in their life baby corals are called a planula, they're microscopic, and they're covered in little cellular oars that allow them to move and find a place to settle. As they settle, baby coral metamorphoses into its adult form, but its still incredibly tiny and all alone. So our intrepid hero begins making itself some friends, by cloning.

"I'm pleased...we're pleased...it's nice to meet you"
Courtesy Nhobgood via Wikimedia Commons

Each of those little anemone looking things up there is a clone of a single polyp that settled on a hard surface. If the entire colony is very large, then the original polyp probably settled decades ago. Some head's of coral have been estimated to be over a thousand years old! This slow growth rate is one of the reasons many coral reefs are at risk of extinction.

 Amazingly, although the clones are separate individuals from the other polyps they all share body tissues with one another. As the polyps catch prey with their stinging tentacles and eat it; the nutrients from that food are actually spread across the shared tissue so that the whole colony benefits. These shared tissues are also what secrete the hard skeleton of stony corals. And it's inside the corals' shared tissues that we can find the reason for their stony skeleton.

Just beneath the skin of stony corals lives one of a number of different algae. These single-celled seaweeds, called zooxanthellae, (pronounced zo-zan-thell-ee) are taken in by the coral deliberately because they can benefit one another greatly. The algae is protected from the thousands of mouths out in the plankton and the corals' wastes make great fertilizer. The coral also benefits because the algae's photosynthesis provides oxygen and nutrients both of which the coral can use. So the coral creates this elaborate skeleton in part to reach for the sun. The skeleton acts like the trunk and branches of a tree pushing the coral and its algae buddies towards the light. The constant competition for sun is what has driven the evolution of so many amazing forms and shapes of different corals.

Enough sun salutes to make a yogi weep for joy
Courtesy US Fish and Wildlife via Flickr

 This mutual symbiosis has been going on for so long and is so beneficial that some coral species can't feed themselves without their zooxanthellae. When people talk about coral bleaching this is what they mean. Something has gone wrong in the ecosystem, so the algae have either gone elsewhere or died. Leaving only skeletons behind. Luckily you can easily help prevent bleaching if you visit tropical areas. Danovaro et. al discovered that synthetic sunscreens actually encourage the growth of viruses that infect and kill zooxanthellae. So when you take that snorkeling trip make sure to use non-synthetics like titanium dioxide or zinc oxide. Often times these sunscreens are labeled as "coral safe" or "sensitive skin" so they're easily found.

References:

http://www.fws.gov/endangered/laws-policies/

http://www.noaanews.noaa.gov/stories2014/20140827_corallisting.html

http://www.ucmp.berkeley.edu/cnidaria/anthozoafr.html

https://marine.rutgers.edu/pubs/private/Mass%20et%20al_Immunolocalization_PNAS2014.full.pdf

Danovaro et. al, "Sunscreens Cause Coral Bleaching by Promoting Viral Infections", Environmental Heatlth Perspectives Apr. 2008: 116(14): 441-447. Accessed via http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2291018/

Hoover, John P. "Hawai'i's Sea Creatures: A Guide to Hawai'i's Marine Invertebrates", pg 46-49, Mutual Publishing, 1999

Monday, September 8, 2014

The Punkest Fish in the Sea

Dust off your record player, whip out that old Sex Pistols vinyl, and get moshing because this week we're talking about the punkest fish there is: the rock-mover wrasse.

"Oi, Oi, Oi!!!"
Courtesy Steve Dunleavy via Flickr

Rock-movers, also called dragon wrasses (Novaculicthys taeniourus), are a tropical fish found all throughout the Pacific and Indian oceans. So how is it punk? A better question would be how isn't it? But you wouldn't know that would you poser!? 

First off; just look at that thing. That is the single most rockin' mohawk in the history of evolution. Not only does it have two giant fans on its head, the dorsal (back) and anal (you can probably guess) fin have adapted into mohawks too. It's also patterned like someone used a cigarette to put burn holes in a national flag and then splashed whitewash across it. There's that subdued and tasteful green background with the orderly, geometric, brown, dividing lines; and then a bunch of random white splotches ringed by black. These adaptations allow juvenile rock-movers to pretend they're drifting dead algae that's full of holes. Yeah they dress as trash. Throw a safety pin on there and you've got the whole look locked down.


















I'll be honest I'm not sure I remember which picture is the fish...
Courtesy Ken Tam and Trip & Queball via Flickr

Of course it's not enough to dress punk. If you don't want to get called out as a poser you've got to act punk too. When rock-movers are put in aquariums while they're still small, other fish will often pick on them. However once they size up a bit and get confident they'll take on virtually everything around them. They establish a territory and guard it against any and all comers; I mean literally too. I was first introduced to this fish in an open top tank behind the scenes at an aquarium. I leaned over to look in, and a rock-mover shot out from the coral and charged the surface. A four inch fish tried to take on a 6 foot human because I looked at him funny.

In the wild rock-mover wrasses can be found living above sand and coral rubble between reefs. These fish deliberately live in the broken waste between the closest things the ocean has to cities. That is hardcore as s**t. They constantly toss rocks and coral rubble around  (hence the name) even building them into forts which they can sleep under. Now fancy "educators" and "scientists" might try to tell you they lift the stones to look for invertebrates underneath that they can eat, but we all know they're really practicing putting bricks through windows. Sometimes rock-movers will channel all their teen angst at once to lift rocks nearly as heavy as themselves or bury completely.

Best watched with Anarchy in the UK playing in the background

But there's one final nail in the coffin for this being the most punk fish in the sea. Something that's an essential stage in the punk lifecyle. They totally grow out of it. See the crazy flamboyant colors and appendages are just a phase. Every picture I've shown you so far has been a juvenile. Eventually like any punk; rock-movers settle down, put on some more practical fins, and have a couple hundred kids.

Though they might go to an occasional Alice Cooper concert
Courtesy J.E.Randall via EOL

References:

Thursday, September 4, 2014

A Worm as a Weapon

One of the things I love about the ocean is that every separate surface is its own ecosystem. If you look at the shell of a crab you're likely to find plants and animals growing there. And that's just the ones that don't deliberately decorate themselves. Many times the organisms living on and around each other form some kind of symbiotic relationship. As you probably remember from school, symbiosis is when two organisms live together and can affect each other's behavior. Often times we say that both benefit one another, but that's only one of three types. Mutually beneficial symbiosis is conveniently called mutualism. You've probably already heard of the symbiosis where one organism benefits and the other is harmed; it's called parasitism. Finally when one organism benefits and the other doesn't get anything but also isn't harmed it's called commensalism.

All three types are frequently observed in this environment 
Courtesy Canyon 289 via Flickr

Chris Mah, who is an awesome scientist and blogger over at the Echinoblog did a post in 2010 about a team of scientists who took a closer look at a cool symbiosis. You can read it here. In his post Dr. Mah talks about how we thought that the banded scale worm (Arctonoe vittata), which lives on a number of invertebrates in the Pacific northwest, probably didn't benefit its host organisms. Consequently they are generally considered commensals. However a team of scientists decided to see if one of the worms' hosts, the leather star (Dermasterias imbricata), preferred to have a worm over not. If they did prefer to have the worms it would suggest the worm benefited the star and would actually be a case of mutualism. Well it turns out the stars chose worms over nothing, other stars, and even their favorite foods! The scientists who wrote the paper offer suggestions for how the worm benefits the star, but also recommend looking into it more. I'd like to offer the video below as evidence of the worm's benefit to the star.


That is the same banded scale worm biting the hell out of a sunflower star's (Pycnopodia helianthoides) rays. Seriously the worm looks like the love child of a graboid and a xenomorph when it chomps down. In this case the worm is protecting a keyhole limpet (Diodora aspera). As far as I'm aware sunflower stars don't eat leather stars, but the morning sun star (Solaster dawsoni) consumes pretty much everything; especially other stars. Solaster dawsoni is such an invertebrate killer that it's also commonly called the vampire or death star.

Oof!  The leather star is probably not gonna regenerate from that one.
Courtesy Brooke Reiswig at:
Clearly the leather star could potentially benefit from the predator warding prowess of the scale worm. Wouldn't it be cool if the scale worm also occurred on morning sun stars so they could be protected from one another, because they're totally cannibalistic!? Oh wait they do!

Courtesy same as above

 That specific worm could be jumping ship from the star being eaten, but banded scale worms have been documented living on morning sun stars. Obviously no scientific rigor has been applied to this hypothesis yet, so it may turn out to be a load of hooey, but it's exciting to look at evidence and begin to form questions. I hope we'll see a study or some video evidence of stars also being protected in the future.

References:



Friday, August 22, 2014

The Age of Sail

Oh boy are we going into the woods this week. For those who know me it's no secret that I love jellies (The squishy animals. I don't care much either way about the fruit spread.) So when IFLScience posted this article about by-the-wind-sailors, Velella velella  (dibs on the band na...oh) washing up in their thousands in Monterey bay I couldn't help but get excited. Not only because velella are incredibly cool, but because just explaining what they are is an odyssey of learning on its own. Incidentally this is one of the cases where using the scientific name is actually easier than the common one, so from here on I'll be referring to these animals as velella.

Hundreds of velella washed up on a beach. A surprisingly normal occurrence.
Courtesy Bettina Walter via Flickr

Now on the surface jellies seem pretty simple, and in terms of structure they are. They have no brain, their outer layers are usually one to three cells thick, and since they only have one hole in and out of their body; they eat and poop from the same opening. But jellies are one of those groups of animals that are so diverse and confusing they make a game of thrones family tree look like an elementary school ancestry project. In fact what we usually call jellyfish aren't even all the same thing. Let Steve Haddock from the Monterey Bay Aquarium Research Institute (MBARI) explain how there is no such thing as a jellyfish.

Seriously though MBARI has the best youtube channel

If you aren't able to watch that video it basically explains that so many different types of animals have evolved gelatinous forms that there isn't a great case for calling anything a jelly. In the interest of simplicity however when I refer to something as a jelly I'm talking about a tentacled, free-swimming life stage of either a scyphozoan, hydrozoan, or cubozoan. These three groups are classes of cnidarians (pronounced: nye-dairy-annes) which are animals whose tentacles have cells containing venom injecting harpoons. These stinging cells (called cnidocytes) are used partly for defense, but primarily  for prey capture. This is actually why humans can't feel the stings of many jellies; the relative size and sturdiness of their prey compared to the jelly determines how strong the sting needs to be. Jellies that prey upon fish, squid, and larger crustaceans need to make sure their prey is paralyzed or dead almost the instant it comes into contact with their tentacles. If  prey were to struggle hard enough it could do serious damage to the thin skinned, gooey jelly. Even though many jellyfish can't hurt you; I never recommend people touch them. So many types of jellies look similar to one another that it can be hard to tell the painful stingers from the harmless ones.

Especially the way most people find them.
Courtesy Justin Henry via Flickr

So where does the whole "tentacled free-swimming life stage" I mentioned fit into our story of velella? Well jellies have an astonishing life cycle. There are two completely separate phases to these animals. The phase we're most familiar with is usually what's called the medusa. Medusas have distinct sexes and reproduce when males release packets of sperm into the water which the females have to eat. Not only is there only one way into and out of the jellies, but the females' reproductive organs are inside their digestive track. Many species brood their eggs for a while holding them in their tentacles. From those eggs are hatched babies that will never become the free-swimming jellyfish. Instead they leave their mother's embrace and find a spot to settle on the bottom. Once settled they morph into their other major life stage; the polyp. Polyps usually look like very tiny sea anemones. They feed on plankton and detritus (particles of dead stuff) building up energy like a caterpillar. And like a caterpillar they go through a metamorphosis; not into an adult jelly but into a cloning machine. Entirely new organisms grow out of the polyps' bodies. This is the medusa that we know and love. It's like small frogs growing out of the side of tadpoles that never become the adult form! For you visual learners out there, below you'll find the life cycle in a beautiful chart. And in case you've been wondering what the difference is between the hydrozoa and the scyphozoa one big separator comes in the polyp stage. Scyphozoa divide their baby jellies in nice neat stacks whereas hydrozoa bud off all over their bodies.

"Reproductive cycle of jellyfish" by Zina Deretsky, National Science Foundation - http://www.nsf.gov/news/mmg/mmg_disp.cfm?med_id=65102&from=search_list. Licensed under Public domain via Wikimedia Commons

Okay, we've gotten a good understanding of what a jelly is and how their lives work so we can return to our friend velella. Velella is a type of hydrozoan who takes everything we just talked about and flips it the middle tentacle.

Oh my god he's doing right now right now!
Courtesy Andrew via Flickr

 Instead of having a polyp that sticks to the bottom velella has a polyp that sticks to the surface! That's right the beautiful sail-carrying jelly is the stage that does the cloning. For a long time it was assumed that velella was a special multi-polyp, colonial, siphonophore like the Portugese man-o-war Physalia physalis. In fact they look quite a lot alike and behave similarly. But studies now suggest velella is a pretty unique organism being one of only a couple animals in the porptid family. And it's not entirely clear whether the floating polyp is one relatively big individual, or a big shared float with a colony of clones underneath.

Okay, so if what we see is the polyp stage, where are the medusas? Well amazingly the medusas are tiny and when they bud off from the polyp they dive down into the depths. Just about everything about velella is backwards from what we expect. The medusas mate in the deep and their babies cruise up to the surface where they develop into the floating form. Velella polyps show differences in the orientation of their sails depending on where they live. In the center of ocean basins it's hypothesized that velella polyps have sails angled so they're carried both east and west. But closer to shore; polyps have sails oriented so prevailing winds keep them in the ocean.  When large storms or anomalous winds kick up they drive the velella on the water into the shore. And that's the source of Monterey's large stranding.

Velella has few threats to its continued existence so thankfully we can expect these amazing animals to be around for quite a long time. There is the possibility that the larger storms that come along with global climate change will cause more frequent strandings. So as always doing what you can to cut back on carbon emissions is a great way to help make sure the age of sail continues for these wonderful animals.

Sail on my friends, sail on.
Courtesy PowderPhotography via Flickr

References:

K.J. Eckelbarger and R.Larsen. Ultrastructure of the ovary and oogenesis in the jellyfish Linuche ungiculata and Stomopolus meleagris, with a review of ovarian structure in the Scyphozoa. Marine Biology #114, 1992. Accessed via: http://link.springer.com/article/10.1007%2FBF00357260#page-2

Tuesday, August 12, 2014

More Than a Mouth

It's officially Shark Week! Discovery Channel's toothy extravaganza began its 26th year on Sunday. Not everyone is aware that, while Discovery has an educational tint, it is an entertainment channel at its heart. So naturally, in the era of upworthy and facebook, Shark Week has evolved into what I like to call "click bait TV." You can take a look at the week's lineup here and see what I mean. Happily at the bottom of that page, if you read the comments (dangerous waters I know) you'll see people crying out for more educational programming. So to meet the demand, we're going to explore the amazing diversity of sharks!
"Heeeyy yoouuu guuuys" says the whale shark (Rhincodon typus)
Courtesy Adam Brill via Flickr 

Backing up for a second, let's talk about what a shark actually is. From a taxonomic standpoint you could say that there is no such thing as a shark, or alternatively, that skates and rays are highly modified sharks. They're all what we call elasmobranchs, or fish that have skeletons made of cartilage and 5-7 gills. There's a pretty good write up on taxonomy and the nine orders of sharks on The Shark Trust's website if you'd like to explore a little more, or haven't had much experience with classification. Amazingly those nine orders divide down into, depending on who(PDF) you ask, around 450 different species of sharks. With that many animals swimming around you can imagine they don't all look or act the same. 

Familiar Faces

Look at that adorable dorky grin
Courtesy Hermanus Backpackers via Flickr

The sharks we're most familiar with fall into one of three families (a smaller relationship within an order). These are the mackerel sharks (lamnids), requiem sharks (carcharhinids), and hammerhead sharks (sphyrnids). These three families do represent quite a lot of world's sharks, but they're famous for another reason. They tend to be the bitey-est. We can trade "you're more likely to be hurt by          " back and forth forever and it doesn't make much of a difference to people's fears, because fear isn't about logic and statistics. If it was then we would be terrified by another obligate carnivore that harms people daily and even traps them in their homes: domestic cats.(If you don't click any other link, the last one is very worth it. They call 911 on their cat)



Pictured: A merciless killing machine perfectly adapted to the eradication of local fauna, and a shark. 
Courtesy Joe Dunckly via Flickr, and my cat Einstein

The long and short of it is: yes these types of sharks can be dangerous, but they are also beautiful, fascinating, and directly benefit humans. The three families mentioned above have representatives in the the incredibly unforgiving environment of the open ocean. Mackerel sharks in particular spend much of their time over the continental shelves cruising for food. Cruising really is the best word to describe how these animals usually get around. One Great White Shark (Carcharodon carcharias) was tracked travelling in a shockingly straight line from near San Jose, California to the big island of Hawaii in about a month; probably to find a new crop of pinnipeds to eat. He/she averaged about about 4 kilometers an hour that whole trip. That's like lightly jogging from Seattle to Pittsburgh because the grocery store ran out of the brand of cheese you like.

The requiem sharks are notable even among our more well known animals by being some of the most social sharks. Reef shark "feeding frenzies" have been a staple of documentaries for years, so I imagine you won't be surprised when I tell you some sharks hang out in big groups; which by the way is called a shiver. However, Bimini Sharklab in the Bahamas has been doing research that shows juvenile lemon sharks prefer to hang out with others about their own same size and age. They also preferred being with their own kind, choosing other lemon sharks over nurse sharks. Implications of shark racism aside; it's pretty cool that these animals are so social that they'll choose to "roll deep" even when there isn't a survival incentive to do so.

Lastly among our more familiar sharks we have the hammerheads. They're the perfect animal to bridge from the old staples to the weird and wonderful we'll be talking about next. The first question on people's minds whenever they see a hammerhead is of course "What's up with his face?" The weird flattened head is called a cephalofoil (dibs on the band name) and it's a pretty spectacular piece of evolution. Widely placed eyes mean the shark has 360 degree vision in the vertical plane. This means that hammerheads can see everything above and below at all times!

  "I AM looking right at the camera!"
Courtesy Jeroen Elfferich via Flickr

The nostrils of a hammerhead are also placed far to the sides of the head, not unlike our ears, and give these guys stereo smell. More face space also means that the sharks' electrosensors can sweep the bottom, like a metal detector, for prey hiding in the sand.

Weird Uncles

Since the length of this post is starting to get away from me we'll look at just three of the really unusual sharks out there. Let's start with a coastal animal so we're still in our comfort zone and move on to the deep sea from there.


Yes you did just watch a video of a shark walking. That is the fairly tiny epaulet shark (Hemiscyllium occelatum) looking more like a salamander than shark. These little guys (never more than about 3ft long) live in shallow water and even tidepools near Australia and Indonesia. The shark has adapted the walking ability as a means of moving through water too shallow to swim in. Also, like other intertidal organisms, the epaulette shark has to cope with a lack of oxygen while in isolated pools (tiny bubbles in the water escape when the sun warms it.) So to deal with this, the epaulette shark can actually turn off some of its higher brain function to use less oxygen. That's right there are "mindless" killer sharks, they're just under 3ft  long and like to eat worms...intimidating.

Next up we have...

ARKive species - Angular rough shark (Oxynotus centrina)

 Hahahahahaha are you kidding me!? That can't be real. it looks like someone tried to glue a pompadour wig onto a baby shark. Well that my friends is the angular rough shark (Oxynotus centrina). They live fairly deep down and are not very well known because of it. We do know that they are in the dogfish (squaliformes) order and we're pretty sure they hover over the bottom slurping invertebrates out of the muck. That big sail on their back is their first dorsal fin and probably helps them keep from tipping over as they suction their prey. These animals and their cousins also frequently turn up in bottom trawls (big nets that drag along the bottom) so there is concern that we may be heavily impacting these species without knowing anything about their role in their environment.

Our final shark in this survey of diversity takes us both deep under water and back in time.

ARKive image - Frilled shark swimming

The frilled shark (Chlamydoselachus anguineas), sometimes called the eel shark, is a species that probably evolved several million years ago and has changed very little since. In fact, it and its relatives in the cowshark (Hexanchiformes) order, likely represent the transition from truly ancient sharks to the modern representatives. All the cowsharks have 6-7 gill slits with the frilled shark having frilly tufts of gill tissue that show outside the gills; hence the name. Inside the frilled sharks mouth are hundreds of multi-pronged, needle-like teeth which are helpful in holding onto the generally slippery and squishy prey that's found in the deep. Amazingly one study on developing embryos taken from dead sharks suggests they might gestate their young for 3.5 years, twice as long as an elephants!

Well that's it for my first post. I hope you enjoyed learning more about the varied types of sharks in the world. I'll leave you with this cool video of a frilled shark swimming. This one comes courtesy of one of the few shows still worth watching on shark week: Alien Sharks, which covers deep water shark species.


References: